Modeling by threading (Tito software) Unconserved sides chains calculation (Scwrl software) Evaluation (QMean software)
Input alignment information:
Query sequence | LKKNILVVIIVSVLAISAIVSAFFLMRDDAYAIETEGFTYSPKGKVVDFSSEAKYNDTWINNEKTITDKKEMKPINLARTLFLKDGRIQFLGKSVAVKSASDLIELPSKTSITESKGSYKAKSDSNKTLAQLPKGTVVKLAEGRYIILDNAYLKNKQGLNKKLPKNVLVSIDENKKVMLMGDKTIEELGGDDAYIEMENNHYHFDLKKEMLVSQTAKETDIDIRSIKVEIDDNAEKRSLKTAKETEKETTKDSTEKESEKQSNDASGQKSAQNNERSESKDDQTQDASGNNTNGSANNNTARSNGTGGSNSDTNGSQPGGTQNKPNEGDVNKANEIIKKLNEAENTNTFQVPIVDVNLTVKGQVAAAKLKLTDSSKRLNSLEAILYDSKNNIVKKEKLNSTKANQNFTFNNLKYGETYQVVVQGSYKSASNKNQDTIFFRQTVEAKPVVLTPKVTERGEDYMKAELTATELYGHIDKLVLKIKENNSNVITSQKVTVDASQLTKDGQVEVKFNSLSSDKEYIIEMEELIVDGKNVTDDGWYFISSTLKAKPTIEGLNLSYSTDKGEFVASPVNLVDRDESITSIRYVAYLEDDYKVNGSNAKEYAYSVVDANQKKTAVKVGRTVDMNDGNYIFVGYISGNNGQSDYTFATPASNSVVVGKKTKPTVEFSLKEAEQDKLTINYEVFDADNTLLFDNLTHPTLKLYKSDAQGMYSGNPVATVDLTKKSDITNLLEFDGLESEAYYVVVMTGSYNLDDGAGIMVDELIGQSSVFRTTEITKVNASFSLDSVDTTKVAINVKLSDAAVNLNDANLKIYEKKTNTLVKTVPLHGDFEKLMSDSGNSYLFENLSINKEYLVKVEDGYDSGMNHVPVEGQFIFKTKKESPETDKVLLDYKASEMKLGGLAGIAATEKPLIDDYNAVSSITYSIYKADDLNTPLVEQEVSTAADFEKNVYFDLTNKLLGRGYSYVIKADVVWNDNYEDHHIEISSDTIQIKKEKPTVEYEILSRTASEIKLNVYVEDEEESIVPGTLEITSTTGGNEQLQSGKNNVTLPLSSEGTTTIKTTGDYIITSGSSAISDIFMTKQLAALNTTTPQVGAKIAMDASGKSMTIAPEPNAVAKTSVMRTKYDLKDAASSKPDYSITKSGPNQFNTQNLNLPLGNIWFDNSYQLTLDMKMNYTENKIDNQNLANNYYLSIGNGASFVSSLSGAVSTTNNVNSADVFKVTKASTDLEGNISGVTFKNIWTDKYIAYRNGILISNSETPDSFKLIRQADGSYVPELSGRYVNFSVGLVTDEAAGSKIDLYSTQEKLEQVSEAISVKALEEPAISAENIGVYDKRVKLDVIGEDKDNTTVKKANKNELFVNVYKADGTTLVNSIRVDGLPTRDVSVTELSPDTDYVVKVEGKYDLLDGNGEKDKVYYSETIKTEKSLPSMTSTDYSWSPAYGQRAIKGKIDFADESSVLTNIEYRLYDAATISSSLSNLVALEQELGNKTPVSTFDNMTNNPEFSIYNGSGTQNFVSGKTYVIAAYMKTSLTRAPIFLSDAKAVYISPPSNVSAPITLENVSTREATLKFSYNDPQSYFVGGTNKDFQYVLKNTTTGTEVKKGSFQGGNTASWINTFEDLEPATGYTLTISTQYDNLNGGLVRAWNTSFNFTTDDEYVTSNSLTIQLDAGAKAVKLQAKEVRPGSTTIENIKMEFYELIDYGGNNERTQLVETKNITLPSSYPATIAADFNVAGKKKNQSFLGKMIVTYRTPTNEVKTYEKTSNFITLQEDIAAGLKSFKSVRATNDALEVKLDIPQDNSTDKGSYTYELKNENGDVIDTEKVAAEDISKTVSLSMEPTSNYTLTVINPDNQPVALYQGNNEENNLKAEIKKDSFTLMSNNTADAKTTMTVTVEPKELTAWQTVQSWFGKDFTETYNIQKDELDTGVKIDTNYQDTKVTVEETKSGKNFGIIELEESK |
1LOB Chain:A ((6-98)) | ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------FSITKFGPDQ-----QNLIFQGDGYTTKERLTLTKAVRNTVGRALYSSPIHIWDSKTGNVANFVTSFTFVIDAPNSYNVADGFTFFIAPVDTKPQTGG---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- |
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General information:
TITO was launched using:
| RESULT:
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Template: 1LOB.pdb
Alignment : align.pir
Tito was launched with SMD and SCWRL
Tito text output
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3D Compatibility (PKB) 9525 for 433 contacts (22.0/contact) +
2D Compatibility (PS) -9426 + (NN) 65 + (LL) 106508
1D Compatibility (HY) -800 + (ID) 1350
Total energy: 104522.0 ( 241.39 by residue)
QMean score : -0.016
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