Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MTFLEFHQLVKEDLLIYSWIIKNFHLTRQKLMAGGEITMNR---EQVIVMEKGLLVQVN--EEGKNDLYRVFIDQRIIFTTK-------GDITLTALEDTSYSIIRTDELIGKLEDQHLLPTFFLQIAEDFEKGLDWQR-TLISVDPAERAEMILVKIIERYEINSENKPEFPRWLRINVLARFAKCSVSTMSSVVNELVNEGDLNIKGTPWLLTRPYQASCA
1ZYB Chain:A ((44-231))
--------------------------HFIKHKAGETIIKSGNPCTQLCFLLKGEISIVTNAKENIYTVIEQIEAPYLIEPQSLFGMNTNYASSYVAHTEVHTVCISKAFVLSDLFRYDIFRLNYMNIVSNRAQNLYSRLWDEPTLDLKSKIIRFFLSHCEKPQ------GEKTFKVKMDDLARCLDDTRLNISKTLNELQDNGLIELHRKEILIPDAQKL---
General information:
TITO was launched using:
RESULT:
Template:
1ZYB.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -64989 for 1139 contacts (-57.1/contact) +
2D Compatibility (PS) -18421 + (NN) -2214 + (LL) 3304
1D Compatibility (HY) -5600 + (ID) 1350
Total energy: -89270.0 ( -78.38 by residue)
QMean score : 0.439
(partial model without unconserved sides chains):
PDB file :
Tito_1ZYB.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-1ZYB-query.scw
PDB file :
Tito_Scwrl_1ZYB.pdb
: