Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MGLMKFQLFIQPKLDVLQGNIVEYEILLR-DDSAVPRFPLSELEAVLADEELYLAFSEWFSEAFLDVL---KKYPNDRFAINIAPQQLFYI------ETLHWLDKLKSESHRITVEMTEDIFDVPGHKRHLNANDKNAFILNKIKVIHGLGYHIAIDDVSCGLNSLERVMSYLPYIIEIKFSLIHFKNIPLEDLLLFIKAWANFAQKNKLDFVVEGIETKETMTLLESHGVSIFQGYLVNKPFPV
4LJ3 Chain:A ((38-265))
----EFKPWIQPVFCAQTGVLTGCEVLVRWEHPQTGIIPPDQFIPLAESSGLIVIMTRQLMKQTADILMPVKHLLPDNFHIGINVSAGCFLAAGFEKECLNLVNKLGNDKIKLVLELTE--------RNPIPVTPEARAIFDSL---HQHNITFALDDFGTGYATYRYLQAFPVDFIKIDKSFVQMASVD-EISGHIVDNIVELARKPGLSIVAEGVETQEQADLMIGKGVHFLQGYLYSPPVP-
General information:
TITO was launched using:
RESULT:
Template:
4LJ3.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -137282 for 1690 contacts (-81.2/contact) +
2D Compatibility (PS) -23033 + (NN) -11144 + (LL) 1356
1D Compatibility (HY) -18400 + (ID) 2600
Total energy: -191103.0 ( -113.08 by residue)
QMean score : 0.595
(partial model without unconserved sides chains):
PDB file :
Tito_4LJ3.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-4LJ3-query.scw
PDB file :
Tito_Scwrl_4LJ3.pdb
: