Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
| Query sequence | VKVNKFFKKTTHVLLVAGLTIGLTAPFTGTTAQAAA----DTVPIQILGINDFHGALETASKDASGSPIGGADYLATN--LDNATNSFLQANPGATTDNAIRVQAGDMVGASPAVSGLLQDEPTMKVLQKMNFEVGTLGNHEFDEGLPEYKRILDGVSTNKFGPIVEAYPRVKSDMKIVAANVVNKGTNTVAEGFLPYYVKEIDGVKVGFIGIVTTEIPNLVLANHIKDYDFL---DEAETIVKYSAELRG-QGVNAIVVLSHVPALSTGNPNTGTKQDVAGEAANMMTKANELDPNNSVDLVLAGHNHQ-------------YTNGLVGK------TRIVQSYNNGKA-----FSDVTGELDKTTGDFVSP-PDAKITYN------TRSVTPNADITAVTE----DAKSRIEGVINETIGLANKDVISRDTNPDNKAIDDKESELGNMITDAQRYMANKAGADVDFAMTNNGGIRSDLTTRLANGQNEITWGAAQAVQPFGNILQVVEMTGADILEALN--QQYLSNQTYFLQISGLKYTFTDTDDLDHAYKVASVTTEDGTPLKTDQKYKVVINDFLFGGGDGFSAF-KKANLVTAIDPDTETFINYIKDQKAAGKVITAQKEGRKVYKSQAEIDKETKDAAIKAIKEATKINKLAEKDKTLTGTTLPGATVSVQKATANARMALAAGPNATADANGKFSVDVTSLNLKKGDQITTTITDPNGYSTTFQATVQAAATTPPDNGNGGTDNGNGNGNNGGTDGNGGTNNGNGSGTNGGTTTTEDPTTTTSNTSTTGTSSNTSLPTTGDTAGLATVFGVILTTTALYVLRKRS |
| 2USH Chain:A ((26-531)) | ------------------------------------YEQDKTYKITVLHTNDHHGHFWRNEYGEYG--------LAAQKTLVDGIRKEVAAEGGSV----LLLSGGDINTGVPE-SDLQDAEPDFRGMNLVGYDAMAIGNHEFDNPLTVLRQ------QEKW-----------AKFPLLSANIYQKSTGERL--FKPWALFKRQDLKIAVIGLTTDDTAK-----YFTDIEFRKPADEAKLVIQ---ELQQTEKPDIIIAATHMGHYDNGEHGSNAPGDV--EMARAL-------PAGSLAMIVGGHSQDPVCMAAENKKQVDYVPGTPCKPDQQNGIWIVQAHEWGKYVGRADFEFRNGEMKMVNYQLIPVNLKKKV---SERVLYTPEIAENQQMISLLSPFQNKGKAQLEVKIGETNGRLEGD---RDK------VRFVQTNMGRLILAAQ---MDRTGAD--FAVMSGGGIRDSIEA------GDISYKNVLKVQPFGNVVVYADMTGKEVIDYLTAVAQMKPDSGAYPQFANVSFVAK-------KIK--------GEPVDPAKTYRMATLNFNATGGDGYPRLDNKPGYVNTGFIDAEVLKAYIQ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- |
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General information:
TITO was launched using:
| RESULT:
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Template: 2USH.pdb
Alignment : align.pir
Tito was launched with SMD and SCWRL
Tito text output
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3D Compatibility (PKB) -108793 for 3720 contacts (-29.2/contact) +
2D Compatibility (PS) -48228 + (NN) -22033 + (LL) 13472
1D Compatibility (HY) -25200 + (ID) 6000
Total energy: -196782.0 ( -52.90 by residue)
QMean score : 0.449
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