Modeling by threading (Tito software) Unconserved sides chains calculation (Scwrl software) Evaluation (QMean software)
Input alignment information:
Query sequence | MAFYFEEPSRTFSEFLLVPGYSSAECVPTNVSLKTPIVKFKKGEESAITMNIPLVSAIMQAVSDDNMGIALATEGGVSFIFGSQSIESEAAMVSRVKNHKAGFVISDSNISPDKTLQDILDLKEKTGHSTVAVTEDGTAHGKLLGIVTSRDYRVTRMSPDEKVADFMTPFEKLVTANKSTTLKEANNIIWDNKLNALPLVDDNEHLVHMVFRKDYDSNKENKLELLDSSKRYVVGAGINTR-DYEERVPALVEAGADILCIDSSEGYSEWQKRTLDYVRGKYGDTVKVGAGNVVDRDGFRYLAEAGADFVKVGVGGGSICITREQKGIGRGQATALIDVAKARDEYFEETGVYIPICSDGGIVYDYHMTLALAMGADFIMLGRYFSRFDESPTNKVNLNGTYMKEYWGEGANRARNWQRYDLGGDKKLSFEEGVDSYVPYAGSLKDNVAISLSKVRSTMCNCGALNIPELQQ-----KAKITLVSSTSIVEGGAHDVVVKDASNNLIK |
1NFB Chain:A ((31-498)) | ----------TYNDFLILPGY--IDFTADQVDLTSALTK-------KITLKTPLVSSPMDTVTEAGMAIAMALTGGIGFIHHNCTPEFQANEVRKVKKYEQGFITDPVVLSP-----------------GIPITDTGRMGS----------------------------------APAGITLKEANEILQRSKKGKLPIVNEDDE-VAIIA------NRDYPLASKDAKKQLLCGAAIGTHEDDKYRLDLLAQAGVDVVVLDSSQGNSIFQINMIKYIKDKYPNLQVIG-GNVVTAAQAKNLIDAGVDALRVGMGSGSICITQEVLACGRPQATAVYKVS----EYARRFGV--PVIADGGIQNVGHIAKALALGASTVMMGSLLAATTEAPGEYFFSDGIRLKKYRGM------------------------------DKGSIHKFVPYLIAGIQHSCQDIGAKSLTQVRAMMYSGELKFEKRTSSAQ------------------- |
|
General information:
TITO was launched using:
| RESULT:
|
Template: 1NFB.pdb
Alignment : align.pir
Tito was launched with SMD and SCWRL
Tito text output
|
3D Compatibility (PKB) -199191 for 3095 contacts (-64.4/contact) +
2D Compatibility (PS) -39910 + (NN) -13965 + (LL) 7448
1D Compatibility (HY) -23200 + (ID) 6400
Total energy: -275218.0 ( -88.92 by residue)
QMean score : 0.443
|
|
|