Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MSEIKVKEATLAKYATKLESKGKSTEYLPMKGGNMSYSQANSINHFRTALFDLVDAVDNFQGVVGTDAKRLKELGASFTRKDQELERSMGLGGK
1LYP Chain:A ((4-25))
--------------------------------------------------------------------KRLRKFRNKIKEKLKKIGQKIQ----
General information:
TITO was launched using:
RESULT:
Template:
1LYP.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) 2175 for 78 contacts (27.9/contact) +
2D Compatibility (PS) -2535 + (NN) -1180 + (LL) 4164
1D Compatibility (HY) -2000 + (ID) 200
Total energy: 424.0 ( 5.44 by residue)
QMean score : 0.669
(partial model without unconserved sides chains):
PDB file :
Tito_1LYP.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-1LYP-query.scw
PDB file :
Tito_Scwrl_1LYP.pdb
: