Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MYKIIAIDIDGTLLNDTHEITPAVRDSIKAAKAKGVKVVLCTGRPLAGIKKSLIELDLLDEGDYAITFNGAVVLETASEKTLADITLNKTELEEIYAFCHAENVNVTYFDGKNMYV-----PSRKITEITCQDSLLLGTPLYHLPVEEAPESIHVSKVMLLDSPEKITDVIKKLPENIKEKFYVVRSVPYNLEFLQKGVNKGSALASLADKLGVDQSEVMSIGDQENDITMIEYAGMGVAMGNATEHIKEIANYTTTTNNEDGVAQAIQMLILDR
2QYH Chain:A ((4-257))
--KIVFFDIDGTLLDEQKQLPLSTIEAVRRLKQSGVYVAIATGRAPFMFEHVRKQLGI----DSFVSFNGQYVVFEGN--VLYKQPLRREKVRALTEEAHKNGHPLVFMDAEKMRASIGDHPHIHVSMASLKFAHPPVDPLYY-------ENKDIYQALLFCRAEEEEPYVRNYPE-----FRFVRWHDVSTDVLPAGGSKAEGIRMMIEKLGIDKKDVYAFGDGLNDIEMLSFVGTGVAMGNAHEEVKRVADFVTKPVDKEGIWYGLKQLQLI-
General information:
TITO was launched using:
RESULT:
Template:
2QYH.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -161159 for 2122 contacts (-75.9/contact) +
2D Compatibility (PS) -27377 + (NN) -10793 + (LL) 1396
1D Compatibility (HY) -14400 + (ID) 3400
Total energy: -215733.0 ( -101.66 by residue)
QMean score : 0.530
(partial model without unconserved sides chains):
PDB file :
Tito_2QYH.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-2QYH-query.scw
PDB file :
Tito_Scwrl_2QYH.pdb
: