Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MATTMRLDKYLKVSRLIKRRTVAKEVAEKGRIAVNGVTA-KPGTNVKSG--DELVIRFGPKIVTAKIERLEENAKKEQATEMYTIIKEERTDESR
2CQJ Chain:A ((106-163))
-SSGRRLPTVLLKLRMAQHLQAAVAFVEQGHVRVGPDVVTDPAFLVTRSMEDFVTWVDS------------------------------------
General information:
TITO was launched using:
RESULT:
Template:
2CQJ.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -19757 for 354 contacts (-55.8/contact) +
2D Compatibility (PS) -5789 + (NN) -211 + (LL) 3580
1D Compatibility (HY) -1200 + (ID) 550
Total energy: -23927.0 ( -67.59 by residue)
QMean score : 0.519
(partial model without unconserved sides chains):
PDB file :
Tito_2CQJ.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-2CQJ-query.scw
PDB file :
Tito_Scwrl_2CQJ.pdb
: