Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
LKKWKRDHLGMVMGILNVTPDSFSDGGKYMQVEEAVARALQMAEDGAAIIDVGGISTRPGFSEVTPDEELARIIPVIKAV--RTKLPDIWISVDSWRAEVAEQAILAGADMINDQWGAKKEPKIAEVAAKYDVPICLMHNRENAQYDNFLEDVKKDLLESIAIAKAASVPDEHIILDPGFGFVKTPAQNLEVLRRIDEIVALGYEVLLGTSRKSTIGLVLGTTPGDRMEGTGATTVYGFSKGCTITRVHDVLPIARMVRMTDAITGKLDITNL
3H2F Chain:A ((41-294))
----------LIMGILNVTPDSFSDGGSYNEVDAAVRHAKEMRDEGAHIIDIGGE-----FAKVSVEEEIKRVVPMIQAVSKEVKLP---ISIDTYKAEVAKQAIEAGAHIINDIWGAKAEPKIAEVAAHYDVPIILMHNRDNMNYRNLMADMIADLYDSIKIAKDAGVRDENIILDPGIGFAKTPEQNLEAMRNLEQLNVLGYPVLLGTSRKSFIGHVLDLPVEERLEGTGATVCLGIEKGCEFVRVHDVKEMSRMAKMMDAMIGK------
General information:
TITO was launched using:
RESULT:
Template:
3H2F.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -130897 for 2111 contacts (-62.0/contact) +
2D Compatibility (PS) -27757 + (NN) -20182 + (LL) 1144
1D Compatibility (HY) -26800 + (ID) 7450
Total energy: -211942.0 ( -100.40 by residue)
QMean score : 0.551
(partial model without unconserved sides chains):
PDB file :
Tito_3H2F.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-3H2F-query.scw
PDB file :
Tito_Scwrl_3H2F.pdb
: