Modeling by threading (Tito software) Unconserved sides chains calculation (Scwrl software) Evaluation (QMean software)
Input alignment information:
Query sequence | MLTWVIRVCFLILGGTTGVFSLPALWVKLGIGHILLINNPYTDALIGALIFYLITFWAVKYVEAALNWLEEKLAKIAIATLVYGGLGLFVGLVIAFFASNALSQTNIPLLNSVVPVILTLVLGYLGFRIGISRRNEFGNFVNNRNAKKRTPEEEKTEEKSKKTYKILDTSVIIDGRIA-----DILTTGFLDGTVVIPLFVLAELQHIADSSDTLKRTRGRRGLDILNRIQKEDAIQVEMYEGDFEDTPEVDSKLVKLAKVMGGIVVTNDYNLNKVCEFQNVPVLNINDLANAVKPVVLPGEKMTVLMVKDGKEHNQGVAYLDDGTMIVVEDGRKFINETIQVEVTSVLQTSAGRMIFAKPS |
1O4W Chain:A ((10-126)) | ----------------------------------------------------------------------------------------------------------------------------------------------------------------KVRCAVVDTNVLMYVYLNKADVVGQLRE-FGFSRFLITASVKRELEKLEMSLRGKEKVAARFALKLLEHF--------EVVE----TESEGDPSLIEAAEKYGCILITNDKELKRKAKQRGIPVGYLKED------------------------------------------------------------------------ |
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General information:
TITO was launched using:
| RESULT:
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Template: 1O4W.pdb
Alignment : align.pir
Tito was launched with SMD and SCWRL
Tito text output
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3D Compatibility (PKB) -9620 for 811 contacts (-11.9/contact) +
2D Compatibility (PS) -11617 + (NN) -1810 + (LL) 19372
1D Compatibility (HY) 2800 + (ID) 500
Total energy: -1375.0 ( -1.70 by residue)
QMean score : 0.260
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