Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MTFKGFDKDFNITDKVAVVTGAASGIGKAMAELFSEKGAYVVLLDIKEDVKDVAAKINPSRTLALQVDITKKENIEKVVAEIKKVYPKIDILANSAGVALLEKAEDLPEEYWDKTMELNLKGSFLMAQIIGREMIATG-GGKIVNMASQASVIALDKHVAYCASKAAIVSMTQVLAMEWAPYNINVNAISPTVILTELGKKAWAG-QVGEDMKKLIPAGRFGYPEEVAACALFLVSDAASLITGENLIIDGGYTIK
1PR9 Chain:A ((11-241))
-----------------LVTGAGKGIGRGTVQALHATGARVVAVSRTQADLDSLVRECPG-IEPVCVDLGDWEATERALGSVGPV----DLLVNNAAVALLQPFLEVTKEAFDRSFEVNLRAVIQVSQIVARGLIARGVPGAIVNVSSQCSQRAVTNHSVYCSTKGALDMLTKVMALELGPHKIRVNAVNPTVVMTSMGQATWSDPHKAKTMLNRIPLGKFAEVEHVVNAILFLLSDRSGMTTGSTLPVEGGF---
General information:
TITO was launched using:
RESULT:
Template:
1PR9.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -158161 for 1906 contacts (-83.0/contact) +
2D Compatibility (PS) -24499 + (NN) -3678 + (LL) 1600
1D Compatibility (HY) -14800 + (ID) 4100
Total energy: -203638.0 ( -106.84 by residue)
QMean score : 0.515
(partial model without unconserved sides chains):
PDB file :
Tito_1PR9.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-1PR9-query.scw
PDB file :
Tito_Scwrl_1PR9.pdb
: