Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
LRKLDFSYNNANYNAEFLMKILTTLKDITKVEQFTIEIIDAVPNDQEQFKEEKGLFSKEVFDFNNLVKESHGIKIDFKEITNILKQCRTVWELSMLVVTSENELNDSGKVLCEVELIEGDLFAILYSEDFNIDLFLEKFSTDEITIEG
2VAM Chain:A ((170-251))
-----------------------------------LEIVDKNTPMLEAFREADNVLRQGVQGISDLIATPGLINLDFADVKTIMSNKGSAL-MGIGIATGENRAAEAAKKAISSPLLE------------------------------
General information:
TITO was launched using:
RESULT:
Template:
2VAM.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -13747 for 395 contacts (-34.8/contact) +
2D Compatibility (PS) -8524 + (NN) -1233 + (LL) 5136
1D Compatibility (HY) -5200 + (ID) 900
Total energy: -24468.0 ( -61.94 by residue)
QMean score : 0.154
(partial model without unconserved sides chains):
PDB file :
Tito_2VAM.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-2VAM-query.scw
PDB file :
Tito_Scwrl_2VAM.pdb
: