Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MIVIIDYDTGNTKSISKALDFIGLQNKISS-DATEISQAD----GVILPGVGAYPEAMKELTRRGLNKTLKEIAAGGKPILGVCLGMQLLLESSNEHSFTNGLGLIPGHVEKLPEDPEFAVPHMGWNQLQIKRATPLTKQL------DGEYVYYVHSYYAN----CPEEYIIATSGYSIEVPGMIN-KGNIYGAQFHPEKS-GQIGLEILKGFKEVTYSCKSSQQ
1GPM Chain:A ((10-228))
-ILILDFGSQYTQLVARRVRELGVYCELWAWDVTEAQIRDFNPSGIILSG---GPEST---TEENSPRAPQYVFEAGVPVFGVCYGMQ---------TMAMQLG---GHVEASNER-EF-----GYAQVEVVNDSALVRGIEDALTADGKPLLDVWMSHGDKVTAIPSDFITVASTESCPFAIMANEEKRFYGVQFHPEVTHTRQGMRMLERFVRDICQCEA---
General information:
TITO was launched using:
RESULT:
Template:
1GPM.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -76485 for 1499 contacts (-51.0/contact) +
2D Compatibility (PS) -18910 + (NN) -2598 + (LL) 2120
1D Compatibility (HY) -12400 + (ID) 2800
Total energy: -111073.0 ( -74.10 by residue)
QMean score : 0.453
(partial model without unconserved sides chains):
PDB file :
Tito_1GPM.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-1GPM-query.scw
PDB file :
Tito_Scwrl_1GPM.pdb
: