Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MFNWYKKYREEKRDYKQYKKRIAALPEDYKTAMKAIETYLWNFAKGAGMFEILKNVLEMFENAAADNLELKAVVGDDLAEFADNLLSEFPEETWMDKQRQKLRDSIK
1PVV Chain:A ((183-238))
---------------------VVATPEGYEPDEKVIKWAEQNAAESGGSFELLHDPVKAVKDADVIYTDVWASMGQE------------------------------
General information:
TITO was launched using:
RESULT:
Template:
1PVV.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -17850 for 266 contacts (-67.1/contact) +
2D Compatibility (PS) -5578 + (NN) 1704 + (LL) 4140
1D Compatibility (HY) 400 + (ID) 750
Total energy: -17934.0 ( -67.42 by residue)
QMean score : 0.155
(partial model without unconserved sides chains):
PDB file :
Tito_1PVV.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-1PVV-query.scw
PDB file :
Tito_Scwrl_1PVV.pdb
: