Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MLVGNNIAKSYPNKLVLQNVDFEAKSGDMIVLTGENGSGKTTLLDMLASLKKPDSGTL-----ELDNELFTTNDIRQQIA----YLNNELYAKKSTTIEDFM---KQHGLLFENIELDKWDRL-LAGWRINKRL---KLGELSTGMLMKVKIGSVLARKAKLYLYDEPFASIDIMARSEVMKAIIS-ETNPDAITIISSHHLEGTEKLYSKLWLIKDNTLQTIET--ETYREETGNALIDFYKEEMNK
4MKI Chain:B ((25-238))
--------------VALKDINFSIDDEEFVGIIGHTGSGKSTLIQQLNGLLKPSKGKIYINGIDITDKKVSLKDIRKQVGLVFQYPEYQLF--EETVFKDIAFGPSNLGLSEEEVKERVYEAMEIVG--ISKELADKSPFELSGGQKRRVAIAGILAMRPKILILDEPTAGLDPKGKQEILNKIKEIHDKYKMITILVSHNMEDIARIADKIIVMNRGKIELIGTPREVFRE----------------
General information:
TITO was launched using:
RESULT:
Template:
4MKI.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -71794 for 1416 contacts (-50.7/contact) +
2D Compatibility (PS) -20941 + (NN) -5433 + (LL) 2068
1D Compatibility (HY) -14000 + (ID) 2850
Total energy: -112950.0 ( -79.77 by residue)
QMean score : 0.407
(partial model without unconserved sides chains):
PDB file :
Tito_4MKI.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-4MKI-query.scw
PDB file :
Tito_Scwrl_4MKI.pdb
: