Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
LDNNQKDLNQVIRQLKEKGIVVEKTKSRKDIWKSVSSKAMPNMTLRLQ
2Q5C Chain:A ((127-165))
---SEDEITTLISKVKTENIKIVVSGKT--VTDEAIKQGLYGET----
General information:
TITO was launched using:
RESULT:
Template:
2Q5C.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) 2449 for 228 contacts (10.7/contact) +
2D Compatibility (PS) -4099 + (NN) -1839 + (LL) 580
1D Compatibility (HY) -1600 + (ID) 200
Total energy: -4709.0 ( -20.65 by residue)
QMean score : 0.567
(partial model without unconserved sides chains):
PDB file :
Tito_2Q5C.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-2Q5C-query.scw
PDB file :
Tito_Scwrl_2Q5C.pdb
: