Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
LMVKRGDVYYADLSPVVGSEQGGIRPVLIIQNDIGNRFSPTVIVAAITAKIQKAKLPTHVEATRKDGFEKDSVILLEQIRTIDKQRLTDKITHLDEDLMAKVNKALEVSLGVVEF
5BV2 Chain:P ((525-566))
-----------------------------------------------------------------DGF---SFELSKVVRPYIRERVVDQLAHIDLTLAQAVAKNLGISL-----
General information:
TITO was launched using:
RESULT:
Template:
5BV2.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -7745 for 251 contacts (-30.9/contact) +
2D Compatibility (PS) -4292 + (NN) -1282 + (LL) 5244
1D Compatibility (HY) -4000 + (ID) 800
Total energy: -12875.0 ( -51.29 by residue)
QMean score : 0.512
(partial model without unconserved sides chains):
PDB file :
Tito_5BV2.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-5BV2-query.scw
PDB file :
Tito_Scwrl_5BV2.pdb
: