Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
VGIPILKLGECLLISIQSELDDHTAVEFQEDLLAKIHETSARGVVIDITSIDFIDSFIAKILGDVV-SMSKLMGAKVVVTGIQPAVAITLIELGITFSGVLSAMDLESGLEKLKQELGE
4QTP Chain:A ((41-125))
------------VVSVSGEIDMVTAPALEQAIGAVVAD-SPPALVIDLSAVEFLGSVGLKILAATYEKLGKETGFGVVARGPATRRPIHLTGLDKTFP---------------------
General information:
TITO was launched using:
RESULT:
Template:
4QTP.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -92091 for 582 contacts (-158.2/contact) +
2D Compatibility (PS) -8921 + (NN) -2065 + (LL) 2360
1D Compatibility (HY) -5600 + (ID) 1250
Total energy: -107567.0 ( -184.82 by residue)
QMean score : 0.418
(partial model without unconserved sides chains):
PDB file :
Tito_4QTP.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-4QTP-query.scw
PDB file :
Tito_Scwrl_4QTP.pdb
: