Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MKNILLICGSGASSGFMAAAIRKAAKKRGEQ-----VTVKAASESQ----IDERINEIDYLLIGPHLAYMLDDLKQKVADKDVLVSIIPQATYGTLNGEKALDLILNMEG
13PK Chain:A ((173-243))
MTGIPKILGNGAAGYLMEKEISYFAKVLGNPPRPLVAIVGGAKVSDKIQLLDNMLQRIDYLLIGGAMAYTF---------------------------------------
General information:
TITO was launched using:
RESULT:
Template:
13PK.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -12938 for 269 contacts (-48.1/contact) +
2D Compatibility (PS) -6676 + (NN) -1804 + (LL) 2560
1D Compatibility (HY) -5600 + (ID) 1200
Total energy: -25658.0 ( -95.38 by residue)
QMean score : 0.214
(partial model without unconserved sides chains):
PDB file :
Tito_13PK.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-13PK-query.scw
PDB file :
Tito_Scwrl_13PK.pdb
: