Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MRIYTKTGDKGMTRIIGGSKVSKDNIRIDAYGTLDELNSLIGYTITTLGAEPEIQA-ELEQIQQQLFDAGGDLAT--EEGKRAYKLTSE-PVAWLEDRIDIYADEPPEIEKFILPGGTQAASLLHMARTVTRRAEREIVGMLKIASSNEEVLKYVNRLSDYFFAVARVVNYRAGETDIFYKNSELVFRNKKK
3GAJ Chain:A ((8-187))
-KIYTKNGDKGQTRIIGKQILYKNDPRVAAYGEVDELNSWVGYTKSLINSHTQVLSNELEEIQQLLFDCGHDLATPADDERHSFKFKQEQPTVWLEEKIDNYTQVVPAVKKFILPGGTQLASALHVARTITRRAERQIVQLMREEQINQDVLIFINRLSDYFFAAARYANYLEQQPDMLYR-----------
General information:
TITO was launched using:
RESULT:
Template:
3GAJ.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -56216 for 1345 contacts (-41.8/contact) +
2D Compatibility (PS) -18974 + (NN) -9169 + (LL) 916
1D Compatibility (HY) -16000 + (ID) 4600
Total energy: -104043.0 ( -77.36 by residue)
QMean score : 0.502
(partial model without unconserved sides chains):
PDB file :
Tito_3GAJ.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-3GAJ-query.scw
PDB file :
Tito_Scwrl_3GAJ.pdb
: