Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
VKQAIGFIDSGVGGLTVVREVLKQLPHEQVYYLGDTARCPYGPRDKEEVAKFTWEMTNFLVDRGIKMLVIACNTATAAALYDIREKLDIPVIGVIQPGSRAALKATRNNKIGVLGTLGTVESMAYPTALKGLNRRVEVDSLACPKFVSVVESGEYKSAIAKKVVAESLLPLKSTKIDTVILGCTHYPLLKPIIENFMGDGVAVINSGEETASEVSALLDYHNLL-DATDEEIEHRFFTTGSTQIFKDIAKDWLNMPDMTVEHIKLGK
2OHV Chain:A ((4-264))
--RPIGFLDSGVGGLTVVCELIRQLPHEKIVYIGDSARAP-----KKQIKEYTWELVNFLLTQNVKMIVFACNTATAVAWEEVKAALDIPVLGVVLPGASAAIKSTTKGQVGVIGTPMTVASDIYRKKIQLLAPSIQVRSLACPKFVPIVESNEMCSSIAKKIVYDSLAPLVG-KIDTLVLGCTHYPLLRPIIQNVMGPSVKLIDSGAECVRDISVLLNYFDINGNYHQ-AVEHRFFTTANPEIFQEIASIWLKQ-KINVEHVTL--
General information:
TITO was launched using:
RESULT:
Template:
2OHV.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -228860 for 2275 contacts (-100.6/contact) +
2D Compatibility (PS) -27033 + (NN) -4948 + (LL) -32
1D Compatibility (HY) -32800 + (ID) 6650
Total energy: -300323.0 ( -132.01 by residue)
QMean score : 0.614
(partial model without unconserved sides chains):
PDB file :
Tito_2OHV.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-2OHV-query.scw
PDB file :
Tito_Scwrl_2OHV.pdb
: