Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
LTLLDKLNEDMKQAMRDKEKEKLSVIRMLKAALQNEAIHQGVKDLTPDDEVTVISRELKQRRDSLAEFDKAGRSDLSDKVRSEIVIVEDYAPKQLTPEELENIVKATIEEVGASSKADFGKVMSAIMPKVKGKADGGAVNQFVKKYLS
2LKY Chain:A ((35-87))
----------------------------------------------------------------------------------------ALLTRRLTNDEIKAIAEDLEKRAH-FDHIDIGVLITQMTDEMPREEDIERVRRH------
General information:
TITO was launched using:
RESULT:
Template:
2LKY.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -4929 for 267 contacts (-18.5/contact) +
2D Compatibility (PS) -5634 + (NN) -1477 + (LL) 8008
1D Compatibility (HY) -2000 + (ID) 400
Total energy: -6432.0 ( -24.09 by residue)
QMean score : 0.411
(partial model without unconserved sides chains):
PDB file :
Tito_2LKY.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-2LKY-query.scw
PDB file :
Tito_Scwrl_2LKY.pdb
: