Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MSGLTKIEIITRPNRFHLFQKELAKIGVSGLTVTKALGTGLEKGFIELYRGTKKESNIHERMKIEIVVSTVPVEDVLRVVKETLRTGEPGDGKVFIYPLAEVVKISTGETGIDALQDKPSK
2XBP Chain:A ((1-112))
---MKKIEAIIRPFKLDEVKIALVNAGIVGMTVSEVRGFGRQKGQTERYRGSEYTVEFLQKLKLEIVVEDAQVDTVIDKIVAAARTGENGDGKIFVSPVDQTIRIRTGEKNADAI------
General information:
TITO was launched using:
RESULT:
Template:
2XBP.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -45653 for 718 contacts (-63.6/contact) +
2D Compatibility (PS) -12510 + (NN) -7415 + (LL) 12
1D Compatibility (HY) -5200 + (ID) 2100
Total energy: -72866.0 ( -101.48 by residue)
QMean score : 0.544
(partial model without unconserved sides chains):
PDB file :
Tito_2XBP.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-2XBP-query.scw
PDB file :
Tito_Scwrl_2XBP.pdb
: