Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MILLIDNYDSFTFNLEQYLAEFSEVVVKRNDAADLIKIAALADGIVLSPGPGKPSDAGLLEEVVAKFAKEK-PLLGICLGHQAIGEVFGGEVKRAAKIRHGKVSTMRQTAGAIFANLPEEMPVMRYHSLIVDKNTLPDVLEVLAIATDDSEVMAMKVKDYPVYGLQFHPE-SIGTNDGKQMMENFIHIVEGARENGNLTTKSI
1C30 Chain:B ((218-380))
------------------------IVPAQTSAEDVLKMNP--DGIFLSNGPGDPAPCDYAITAIQKFLETDIPVFGISLGHQLLALASGAKTVKMKFGHHGGNHPVKDVEKNVV------MITAQNHGFAVDEATLPANLRVTHKSLFDGTLQGIHRTDKPAFSFQGHPEASPGPHDAAPLFDHFIELIEQYRKT--------
General information:
TITO was launched using:
RESULT:
Template:
1C30.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -70813 for 1271 contacts (-55.7/contact) +
2D Compatibility (PS) -16971 + (NN) -2894 + (LL) 3056
1D Compatibility (HY) -5200 + (ID) 2400
Total energy: -95222.0 ( -74.92 by residue)
QMean score : 0.414
(partial model without unconserved sides chains):
PDB file :
Tito_1C30.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-1C30-query.scw
PDB file :
Tito_Scwrl_1C30.pdb
: