Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
LKVRGFEVVNEASRKFPEQTISLPIRGDKGSAGYDFFS--NETVTIVPGEKHIFWTDIKSYMQEDEVLNIYV-RSSIGIKKGLLLCNGTGIIDSSYYSNPGNDGNIGIAIKNFSNEPVSIEAGERVAQGVFQKYLVADTDIV----ANESRVGGVGSTGR
1SYL Chain:A ((16-137))
-------------KEFP-----LPTYATSGSAGLDLRACLNDAVELAPGDTTLVPTGLAIHIADPSLAAMMLPRSGLGHKHGIVLGNLVGLINSDY------QGQLMISVWNRGQDSFTIQPGERIAQMIFVPVVQAEFNLVEDFD--------------
General information:
TITO was launched using:
RESULT:
Template:
1SYL.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -52220 for 737 contacts (-70.9/contact) +
2D Compatibility (PS) -12794 + (NN) -3659 + (LL) 1272
1D Compatibility (HY) -9200 + (ID) 1850
Total energy: -78451.0 ( -106.45 by residue)
QMean score : 0.421
(partial model without unconserved sides chains):
PDB file :
Tito_1SYL.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-1SYL-query.scw
PDB file :
Tito_Scwrl_1SYL.pdb
: