Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MNENLITITGLTKKYRKRKPLNDINLSLQKGKIIGLLGPNGAGKTTLLNAISGLLKPTSGTINLAENSKIAYLPSEDFLPNMV--ICDYFRIYHSF-FP--DFDQEKAKQMIRSFG--INIKE----NTKYLSKGNAAKVMLALILCRDVDLYLLDEPFSEIDLISRDDL---IKSIATFLKEDATLVVTTHLIQDMEMMFDEIIFLKRGKIIEQIDTETLREEYRKSVMDYYREVFGHA
1VCI Chain:A ((13-234))
-----VKLENLTKRFGNFTAVNKLNLTIKDGEFLVLLGPSGCGKTTTLRMIAGLEEPTEGRIYFGDRD-VTYLPPKDRNISMVFQ---HMTVYENIAFPLKKFPKDEIDKRVRWAAELLQIEELLNRYPAQLSGGQRQRVAVARAIVVEPDVLLMDEPLSNLDAKLRVAMRAEIKKLQQKLK--VTTIYVTHDQVEAMTMGDRIAVMNRGQLL-QIGSPT--------------------
General information:
TITO was launched using:
RESULT:
Template:
1VCI.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -154215 for 1457 contacts (-105.8/contact) +
2D Compatibility (PS) -20883 + (NN) -7567 + (LL) 2472
1D Compatibility (HY) -13200 + (ID) 3250
Total energy: -196643.0 ( -134.96 by residue)
QMean score : 0.532
(partial model without unconserved sides chains):
PDB file :
Tito_1VCI.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-1VCI-query.scw
PDB file :
Tito_Scwrl_1VCI.pdb
: