Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
| Query sequence | MKKGLLITVMLMVMLALGACSSSESKEDQWSRIKKDKEVVIGLDDSFVPMGFRDKDDNLVGFDIDLAKAVFAEYGIKAKFTPIDWTMKESELKNGSIDLIWNGYTVTDARKKQVAFSQPYMKNEQVLVTLKSSNINQFSDMKNKTLGAQNGASSIDDMAKKPEVLTDIINNNEPELYDTFDTAFIDLNNKRIDGLIIDEVYARYYIDKQKNKDDYNIITGGFDATDFAVGMRKSDKELQKKINEAFEKLYKEGKMQEISKKWFGDDEIAKQ |
| 3VVD Chain:A ((20-256)) | --------------------GGSEFQVRSFEEIKRSGEIRIGTEGAFPPFNYFDERNQLTGFEVDLGNAIAERLGLKPRWIAQSFDTLLIQLNQGRFDFVIASHGITEERARAVDFTNPHYCTGGVIVSRKGGP-RTAKDLQGKVVGVQVGTTYMEAAQKIPGI-------KEVRTYQRDPDALQDLLAGRIDTWITDRFVAKEAIKERKLENTLQVGELVFQER-VAMAVAKGNKSLLDALNRALAELMQDGTYARISQKWFGED----- |
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General information:
TITO was launched using:
| RESULT:
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Template: 3VVD.pdb
Alignment : align.pir
Tito was launched with SMD and SCWRL
Tito text output
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3D Compatibility (PKB) -47529 for 1992 contacts (-23.9/contact) +
2D Compatibility (PS) -26125 + (NN) -14839 + (LL) 3644
1D Compatibility (HY) -14800 + (ID) 3250
Total energy: -102899.0 ( -51.66 by residue)
QMean score : 0.484
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