Modeling by threading (Tito software) Unconserved sides chains calculation (Scwrl software) Evaluation (QMean software)
Input alignment information:
Query sequence | MLERYTRKEMGNIWTEQNRYQAWLEVEILACEAWAELGDIPKEDVAKIRANAKF---DVDRIHEIELETRHDVVAFTRSVSESLGAERKWVHYGLTSTDVVDTANSYLLKQANEILRKDLENFIAIIGEKAKEHKYTVTMGRTHGVHAEPTTFGLKLALWYEEMKRNLERFNFAADGVEFGKISGAVGTYANIDPF---VETYVCEKLGTTPAPISTQTLQRDRHAEYLATLALIATSVEKFAVEVRALQKSEVREVEEFFAKGQKGSSAMPHKRNPIGSENVTGLARVIRGHMVTAYENVPLWHERDISHSSAERIILPDSTILLDYILNRFGNIVKNLTVFPENMKRNMDRTLGLIYSQRVLLALIDKGLAREAAYDVVQPRAMEAWEKQVPFRELVEQDATITENLSAEEIADCFDYNYHLKNVDLIFDRLGL |
3C8T Chain:A ((25-450)) | ----FADDKMRELFSAQSFISRCVETEVALARAQARLGIIPEDAAAGITAAARTFAPEMERLRDDTEIVGYPILPLVEQLSAHAGEAGKYLHWGATTQDIMDTATVLQIRDGLALISRRIESVRKALAALARNHRDTPMAGRTHLQHALPVTFGYKAAVWLSAFDRHAARLEEISPRVLVVEFSGASGTLASLGTRGLDVQRELARELNLG-VPSITWHSARDAVAETVQFLALVSGSLGKLAMDISIMMTTELGEVAEP---------------NPVSCELILAGARIVRNHATSMLDAMIHDFERATGPWHLEWSAVPEGFAVASGILYQAEFMLGGLQVFPDRMRENLDHSRGLIVAEAVMMALAPH-TGRKEAHDIVYLGCRRAVEDKTGLFEVLRTMPEVAKPLGEEALRDLTDPRNYLGSAGAMVD---- |
|
General information:
TITO was launched using:
| RESULT:
|
Template: 3C8T.pdb
Alignment : align.pir
Tito was launched with SMD and SCWRL
Tito text output
|
3D Compatibility (PKB) -173409 for 3398 contacts (-51.0/contact) +
2D Compatibility (PS) -43151 + (NN) -13103 + (LL) 1100
1D Compatibility (HY) -16400 + (ID) 5400
Total energy: -250363.0 ( -73.68 by residue)
QMean score : 0.422
|
|
|