Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
| Query sequence | LDKKFLLTNSTIGIIGGGQLGRMLALAAKAMGYRIIVLDPTADCP---AAQVSDEQIIADYDDKVALRELSEKADVVTYEFENIDYDALKMTQNLVSVPQGSELLSITQDRILEKAYLESANINIAPYAVIVEQDEIENEIKSIGYPAVLKTAQGGYDGKGQVVIHDARDIETAARLLRYG--SCVLEAWIPFEKEISVVVARNLDGQIETFPVAENVHVNNILHTTMVPADVAADVYEEAEEIARKLAEVLQLCGVLAVEMFVTKSGAIYVNELAPRPHNSGHFTIEACSISQFTQHIRAIVGLPLVKPELLKPAVMINILGQHVDAVNKQMVNYPHWFVHYYGKKEAKINRKMGHVTV-LADEPKAVIQDLEETQIWK |
| 4MA0 Chain:A ((3-346)) | -----------IGIIGAGQLARMLSLAGTPLGLEFHCLGKNGDCAEEVVKTVTDIEL-TKVNDVVAW---AKQFDVITFENENISHELIKAINHEVSVYPSAKAIAISQDRLLEKSFMQDHGIATAKFVNIDSLAKLQSAVDDHGLPAILKTRRFGYDGKGQFVIRSQEDITKAWDVLKDAPDGLIYEAFVDFDYEVSQICTADLKGNIAFYPLARNTHKQGIIVESEAPFENVV-LAEKAQQIAKILVKEFAYVGTLAIEFFV-KGDELIVNEIAPRVHNSGHWSIDGAVTSQFENHVRAIAGL-ILGDTTSRKTVMLNCIGGM--PATKDLAALDRVKIHSY-NKEPRKGRKVGHLNLNLNDE--------------- |
|
General information:
TITO was launched using:
| RESULT:
|
Template: 4MA0.pdb
Alignment : align.pir
Tito was launched with SMD and SCWRL
Tito text output
|
3D Compatibility (PKB) -201171 for 2894 contacts (-69.5/contact) +
2D Compatibility (PS) -38003 + (NN) -16299 + (LL) 2560
1D Compatibility (HY) -27200 + (ID) 6250
Total energy: -286363.0 ( -98.95 by residue)
QMean score : 0.474
|
|
|