Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MKIDILSIFPDMFSGVTGNSIIKKAIENERVAVEVTDFREYAEGKHHIVDDYPYGGGAGMLLKAQPIFDAVQAVKEKQPETK---PRVILMDPAGKRFNQKMAEEFAEEEHLVFICGHYEGYDERIREHLVTDEVSIGDYILTGGEIGAMIVMDSVIRLLPGVLGNKDSAVTDSFSTGLLEHPHYTRPADFRGMKVPDILLSGNHAWIEEWRDKESLKRTYERRPDLL----KNYPLTDKQKTWLKEWSDSK
4H3Y Chain:A ((22-266))
MQFDIVTLFPDMFRALTDWGITSRAAKQERYGLRTWNPRDFTTDNYRTIDDRPYGGGPGMVMLARPLEDAINAAKAAQAEQGIGGARVVMMSPQGATLNHDKVMRFAAEPGLILLCGRYEAIDQRLIDRVVDEEVSLGDFVLSGGELPAMALIDAVVRHLPGVLNDAQSAVQDSFVDGLLDCPHYTRPEEYDGVRVPDVLLGGHHAEIEQWRRREALRNTWLKRPDLIVQARKNKLLSRADEAWL-------
General information:
TITO was launched using:
RESULT:
Template:
4H3Y.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -153811 for 1667 contacts (-92.3/contact) +
2D Compatibility (PS) -26063 + (NN) -8438 + (LL) 256
1D Compatibility (HY) -22800 + (ID) 5350
Total energy: -216206.0 ( -129.70 by residue)
QMean score : 0.463
(partial model without unconserved sides chains):
PDB file :
Tito_4H3Y.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-4H3Y-query.scw
PDB file :
Tito_Scwrl_4H3Y.pdb
: