Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MTERGLLIVLSGPSGVGKGTVREAVFKDPETSFDYSISMTTRLPREGEQDGVDYYFRSREVFEQAIKDGKMLEYAEYVGNYY--GTPLEYVEEKLAAGVDIFLEIEVQGAMQVRKAMPEGIFIFLTPPDLSELKNRIIGRGTESMEVVEERMETAKKEIEMMASYDYAVVNDVVANAVQKIKGIVETEHLKTERVIHRYKKMLEGLQ
1ZNY Chain:A ((20-195))
----GRVVVLSGPSAVGKSTVVRC-LRERIPNLHFSVSATTRAPRPGEVDGVDYHFIDPTRFQQLIDQGELLEWAEIHGGLHRSGTLAQPVRAAAATGVPVLIEVDLAGARAIKKTMPEAVTVFLAPPSWQDLQARLIGRGTETADVIQRRLDTARIELAAQGDFDKVVVNRRLESACAEL--------------------------
General information:
TITO was launched using:
RESULT:
Template:
1ZNY.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -66961 for 1196 contacts (-56.0/contact) +
2D Compatibility (PS) -19308 + (NN) -11405 + (LL) 3116
1D Compatibility (HY) -12000 + (ID) 3550
Total energy: -110108.0 ( -92.06 by residue)
QMean score : 0.636
(partial model without unconserved sides chains):
PDB file :
Tito_1ZNY.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-1ZNY-query.scw
PDB file :
Tito_Scwrl_1ZNY.pdb
: