Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MKQYLDLEKYVLENGTQKGDRTGTGTISTFGYQMRFDLQEGFPIMTTKRVPFKLVVSELLWFLHGDTNIRYLLQHNNNIWNEWAFERFVKSDDYKGEDMTDFGLRAERDPAFKEVYQAEMEKFKTRIIEDEAFATKYGELGNIYGKQWREWKTSQGETIDQLADLIEMIKTNPNSRRLIVSAWNPEDIPNMALPPCHSLFQFYVADGKLSCQLYQRSADIFLGVPFNIASYALLTHLIAREVGLDVGEFIHTMGDAHLYNNHIEQVKEQLSRTPHALPKLVLSDKPATIFDFEVADISLDGYNPDPSIKAPISV
3C06 Chain:A ((6-316))
---YLDLAKKVLDEGHFKPDRTHTGTYSIFGHQMRFDLSKGFPLLTTKKVPFGLIKSELLWFLHGDTNIRFLLQHRNHIWDEWAFEKWVKSDEYHGP------------PEFAAVYHEEMAKFDDRVLHDDAFAAKYGDLGLVYGSQWRAWHTSKGDTIDQLGDVIEQIKTHPYSRRLIVSAWNPEDVPTMALPPCHTLYQFYVNDGKLSLQLYQRSADIFLGVPFNIASYALLTHLVAHECGLEVGEFIHTFGDAHLYVNHLDQIKEQLSRTPR-APTLQLNPDKHDIFDFDMKDIKLLNYDPYPAIKAPVAV
General information:
TITO was launched using:
RESULT:
Template:
3C06.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -179753 for 2304 contacts (-78.0/contact) +
2D Compatibility (PS) -32560 + (NN) -23091 + (LL) 1152
1D Compatibility (HY) -38800 + (ID) 10400
Total energy: -283452.0 ( -123.03 by residue)
QMean score : 0.608
(partial model without unconserved sides chains):
PDB file :
Tito_3C06.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-3C06-query.scw
PDB file :
Tito_Scwrl_3C06.pdb
: