Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
| Query sequence | MDLPLSKRVKGVAPSPTLAITAKAKQMKQEGIDVIGLGAGEPDFNTPQNIIDAAIESMNKGFTKYTPSSGIIELKQAIVDKLKKDQFLNYE-TNQIFVGTGAKHVLYSAFQTILDPGDEVIIPVPYWVTYPEQVKLAGGIPVFVETGFDADFKISAADFEKAITKKTKAIVLNSPNNPSGMCYTKEELIAIGEVAEKHQIYILSDEIYEKLYYGNKADLVSIASLSDRLYDLTIVINGVSKAYSMTGWRIGYAAANKEIIAGMSKLADHLTSNPTANAQYAALEAYVG--SQEVPEKMYQAFEERMERFYPELNSIPGFKPKKPDGAFYFFIEVKEAA-HKKGFQDVDAFVAALLEEAKVAVIPGSGFGMP--DYIRLSYATNPDLFQEAINRIKSFMK |
| 1GD9 Chain:A ((2-384)) | ---ALSDRLELVSASEIRKLFDIAAGMK----DVISLGIGEPDFDTPQHIKEYAKEALDKGLTHYGPNIGLLELREAIAEKLKKQNGIEADPKTEIMVLLGANQAFLMGLSAFLKDGEEVLIPTPAFVSYAPAVILAGGKPVEVPTYEEDEFRLNVDELKKYVTDKTRALIINSPCNPTGAVLTKKDLEEIADFVVEHDLIVISDEVYEHFIY-DDARHYSIASL-DGMFERTITVNGFSKTFAMTGWRLGFVAAPSWIIERMVKFQMYNATCPVTFIQYAAAKALKDERSWKAVEEMRKEYDRRRKLVWKRLNEM-GLPTVKPKGAFYIFPRIRDTGLTSKKFSEL------MLKEARVAVVPGSAFGKAGEGYVRISYATAYEKLEEAMDRMERVLK |
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General information:
TITO was launched using:
| RESULT:
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Template: 1GD9.pdb
Alignment : align.pir
Tito was launched with SMD and SCWRL
Tito text output
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3D Compatibility (PKB) -224768 for 3416 contacts (-65.8/contact) +
2D Compatibility (PS) -41803 + (NN) -25926 + (LL) 904
1D Compatibility (HY) -32000 + (ID) 7550
Total energy: -331143.0 ( -96.94 by residue)
QMean score : 0.598
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