Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MTKKICIAIDGPAAAGKSTVAKIVAKKLRFVYIDTGAMYRAVTYIALKNNIAYEDEKAIAALLQKTVIRF--EPGEVQQVFVGSENVTEVIRSIEVTNHVSIVAAHPSIREALQERQQVFATEGGIVMDGRDIGTAVLPNAELKIFLLASVEERAERRYKENMAKGFTGDLDQLKKEIEERDHLDYTRTHSPLKKADDAIEVDTTSMSIDQVANKILSLAELKINN
2FEM Chain:A ((8-224))
------ITIDGPSGAGKGTLCKAMAEALQWHLLDSGAIYRVLALAALHHHVDVASEDALVPLASHLDVRFVSTNGNLEVILEG-EDVSGEIRTQEVANAASQVAAFPRVREALLRRQRAFRELPGLIADGRDMGTVVFPDAPVKIFLDASSEERAHRRMLQLQEKGFSVNFERLLAEIK-------------LVPAADALVLDSTTLSIEQVIEKALQYARQKL--
General information:
TITO was launched using:
RESULT:
Template:
2FEM.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -128748 for 1570 contacts (-82.0/contact) +
2D Compatibility (PS) -21993 + (NN) -11710 + (LL) 904
1D Compatibility (HY) -14000 + (ID) 4350
Total energy: -179897.0 ( -114.58 by residue)
QMean score : 0.681
(partial model without unconserved sides chains):
PDB file :
Tito_2FEM.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-2FEM-query.scw
PDB file :
Tito_Scwrl_2FEM.pdb
: