Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
| Query sequence | MKVAISGG-------GTGGHVYPALALIRELKKSHPEAEFLYIGTEKGL-EAGIV-KREGIPFEAIEITGFKRSLSLENIKTVMRFLSGAKKSKQI--LRDFKPDVVIGTGGYVCGPVVYAAAKLKIPTLIHEQNSVAG-------------LTNKFLSRYTDKVAICFEEVSDSF------ASEKIVFTGNPRASEVVGVDSE---GALEAYGLVSGKPTVLVFGGSRGARGVNEAVEAVLPEWNNR----DFQLLYVTGDVHYEKIKDSLAELNLGNHISVQPFIY--DMPKILNAVTLVVSRA----GATTLAELTALGVPSILIPSPYVTANHQENNARALEKNNAAIVITEAELKNTDLMATVDSILNDEAKLNSMKLSAKQMGRPDAAAKLVEAVLSIMK |
| 3C48 Chain:A ((21-422)) | MRVAMISMHTSPLQQ---GMNVYILSTATELAKQG--IEVDIYTRATRPSQGEIVRVAENLRVINIAAGPYEGL-SKEELPTQLA--AFTGGMLSFTRREKVTYDLIHSHYWLSGQVGWLLRDLWRIPLIHTAHTLAAVKNSYDTPESEARRICEQQLVDNADVLAVNTQEEMQDLMHHYDADPDRISVVSPGADVELYSPG--TERSRRELGIPL-HTKVVAFVG-RLQPFKGPQVLIKAVAALFDRDPDRNLR-VIICGGPS-DTYRHMAEELGVEKRIRFLDPRPPSELVAVYRAADIVAVPSFNESFGLVAMEAQASGTPVIAARVGGL--------PIAVAEGETGLLVDGHSP--HAWADALATLLDDDETRIRMGEDAVEHARTFSWAATAAQLSSLY- |
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General information:
TITO was launched using:
| RESULT:
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Template: 3C48.pdb
Alignment : align.pir
Tito was launched with SMD and SCWRL
Tito text output
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3D Compatibility (PKB) -195850 for 2849 contacts (-68.7/contact) +
2D Compatibility (PS) -36865 + (NN) -12683 + (LL) 572
1D Compatibility (HY) -8400 + (ID) 2450
Total energy: -255676.0 ( -89.74 by residue)
QMean score : 0.499
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