Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
| Query sequence | ---VSLYMLVSTFAVAFIITVIGVPLFIPFLVKLKFGQSIRDEGPKMHEKKSGTPTMGAVVFITAMLISFLVF-SFISGEVSAATWLLFIALALFGALG--------FLDDYIKVVQKRNLGLTSKQKFLGQVVISILFYLVYHFNDFAETLNIP--------FTNI-------------EVDLGWFFVIFILFWLVGFSNAV------------NLTDGLDGLVSGL----------------SVIAFSAFGVIAFYQEQMDVAIFCFAIVGGMLGFLLFNK-NPAKIFMGDTGSLA-------LGGSIAAISILV-------------------HQEWLLLLIGI---------------------IFVIETASVILQVFYF------------KATGGKRIFRMTPIHHHFELGGWSEWRVVLTFWGIGLVGAIISVCVVIF-------- |
| 4L9P Chain:B ((68-519)) | VHPGIPALFREPPLIHDLLSTETTELQSETVNKCLPLLKGIHNSQKGPFNKYGIPALQRKDHLEYLYDSLEDYPASFVALDASRPWMVYWALAGLCLLGEDVTRFRERVISTFTAAQNSTGGIGGGHGQMSHVASSYAAVLSIAMVGGEEAFKLIDRKAMWKWLGKLKQPDGGFTVCEGGEEDVRGAYCAMVVHALLDLPLALPPEAEARQNGLETFTDGLPEYLSRCQTYEGGISGSPGSEAHGAYAFCALACLCLL-GRPEVVVPRYMNIATLLPWLSARQYAPEGGFSGRTNKLVDGCYSHWVGNCWPLVQAALDGTQPLAGPKRSSVGNLYSREGLTRYILSCCQCKLGGLRDKPGKHPDSYHTCYALTGLSTVQYYHYCTDSSVSSKDDFSSAFSWKHDPNFASDGQGSDIGVFTENDRLVPFHPIFVIPHKSAEDIRVWFENQSFDL |
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General information:
TITO was launched using:
| RESULT:
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Template: 4L9P.pdb
Alignment : align.pir
Tito was launched with SMD and SCWRL
Tito text output
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3D Compatibility (PKB) -355307 for 2530 contacts (-140.4/contact) +
2D Compatibility (PS) -32729 + (NN) -7092 + (LL) 120
1D Compatibility (HY) -10000 + (ID) 2400
Total energy: -407408.0 ( -161.03 by residue)
QMean score : 0.231
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