Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
-MFDWLTNSTAIIIILPVVVFILTMFFSSFKLKKSQRRIMLAADLSTIFLIIAVHFFMIVLFNRSFLLYILLFLFILGIVIVVTAAKKEGEIQFRKILRGYWRLCFFIFALLYVALYLYGIVYSLVLMF
4DAM Chain:A ((0-112))
SMNEIMICAVGNVATTPVFRDLANGPSVRFRLAVTARYWDREKN----AWTDGHTNFFTVWANRQLATNASGSLAV-GDPVVVQ-----GRLKVRTDVREGQSRTSADIDAVAIGHDLARGTA------
General information:
TITO was launched using:
RESULT:
Template:
4DAM.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -126485 for 710 contacts (-178.1/contact) +
2D Compatibility (PS) -11890 + (NN) 6041 + (LL) 1916
1D Compatibility (HY) 12400 + (ID) 450
Total energy: -118468.0 ( -166.86 by residue)
QMean score : 0.170
(partial model without unconserved sides chains):
PDB file :
Tito_4DAM.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-4DAM-query.scw
PDB file :
Tito_Scwrl_4DAM.pdb
: