Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
| Query sequence | MKKIPFIIQYVKSTLGPTAIFEGRKVLKFWQMVIVFIFLNALLLLPVSAHFANQSSFDLPSLMPKMATLGTDQLASKISGLTLENGALTDKNAHIVEKTVNGVAGVNLTKAELSGAKNVINFKDQEMTLTDASGYNFEVSYPKDATLSEITSGE----SLVDWVSAQWYLENQAFVFLSMVLMIGSIIFVSSLMLTVFTTLFIWMTKRSSFSSIASFKESVNLTLNALGIPVIAACIIGFIYFDITIIMAVQSLGMVLMIAWTFLKTRFYKTSEKSMAASR |
| 1GYP Chain:A ((218-337)) | ----------------------------------------AVNIIPSTTGAAKAVGMVIPSTKGKLTGMSFRVPTPDVSVVDLTFRATRDTSIQEIDKAIK--------KAAQTYMKGILGFTDEELVSADFINDNRSSVYDSKATLQNNLPGEKRFFKVVSWYDNEW----------------------------------------------------------------------------------------------------------------- |
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General information:
TITO was launched using:
| RESULT:
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Template: 1GYP.pdb
Alignment : align.pir
Tito was launched with SMD and SCWRL
Tito text output
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3D Compatibility (PKB) 1375 for 693 contacts (2.0/contact) +
2D Compatibility (PS) -11893 + (NN) 2785 + (LL) 16120
1D Compatibility (HY) -3600 + (ID) 1400
Total energy: 3387.0 ( 4.89 by residue)
QMean score : 0.101
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