Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MKKVFITTGTEHYLRQLMANYTGGNVTLLQNFSQSLLYQESTGEKLFQEGAEYRVLQSSGSIKGFGVVVFEYIHLRDEEIPIFLQMYQRASLHFSETPGLQSTKLTKAMNMNKFLIISFWDSEVFFHDWKKSPLSKEITNIMRKNNTQSGFSHEDIYHYPEFSHDAK
3FJ2 Chain:A ((20-182))
MKKVFITTGTEHYLRQLMENYIGENVTLLQNFSQSLLYQESTGEKLFQEGKEYRVLQSSGSLKGFGIVVFEYIQLRDEEIPIFLQMYQHASLHFSETPGLQSTKLTKAMNTNQFLIVSFWDSEVFFQEWKKTPLHKEITSIMKKNNTQVGFSHEDIYHYPEFS----
General information:
TITO was launched using:
RESULT:
Template:
3FJ2.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -58106 for 1204 contacts (-48.3/contact) +
2D Compatibility (PS) -17767 + (NN) -7835 + (LL) 176
1D Compatibility (HY) -23600 + (ID) 7250
Total energy: -114382.0 ( -95.00 by residue)
QMean score : 0.424
(partial model without unconserved sides chains):
PDB file :
Tito_3FJ2.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-3FJ2-query.scw
PDB file :
Tito_Scwrl_3FJ2.pdb
: