Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
| Query sequence | MKKKLILGLVMMMALFSLAACGGGGDVVKTDSGDVTKDELYDAMKDKYGSEFVQQLTFEKI---LGDKY--KVSDEDVDKKFNEYKSQYG---DQFSAVLTQSGLTEKSFKSQLKYNLLVQKATEANTDTSDKTLKKYYETW----------QPDITVSHILVA------------DENKAKEVEQKLKDGEKFADLAKEYSTDTATKDNGGQLAPFGPGKMD--PAFEKAAYALKNKGDISAPVKTQYGYHIIQMDKPATKTTFEKDKKAVKASYLESQLTTENMQKTLKKEYKDANVKVEDKDLKDAFKDFDGSSSSDSDSSK |
| 2PV3 Chain:A ((49-259)) | --------------------------------------------------QIMERLIMDQIILQMGQKMGVKISDEQLDQAIANIAKQNNMTLDQMRSRLAYDGLNYNTYRNQIRKEMIISEVRNNEVRRRITILPQEVESLAQQVGNQNDASTELNLSHILIPLPENPTSDQVNEAESQARAIVDQARN--DFGKLAIAHSADQQAL-NGGQM---GWGRIQELPGIFAQALSTAKKGDIVGPIRSGVGFHILKVN-------------------------------------------------------------------- |
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General information:
TITO was launched using:
| RESULT:
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Template: 2PV3.pdb
Alignment : align.pir
Tito was launched with SMD and SCWRL
Tito text output
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3D Compatibility (PKB) -7173 for 1001 contacts (-7.2/contact) +
2D Compatibility (PS) -18515 + (NN) -10708 + (LL) 6332
1D Compatibility (HY) -13600 + (ID) 2250
Total energy: -45914.0 ( -45.87 by residue)
QMean score : 0.605
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