Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
LKNYKAYLIDLDGTMYRGAEVIPEAIIFIENLKRAGLPYLFVTNNSTKTPGQVAEHLTDMGIQAVSDDVFTTSQATVQFMMEQKREKTVYVIGERGIKQELTDNGFEITSSNPA-FVVVGLDREVDYEKFSKAALAVRGGAMFISTNGDAAIPTERGLLPGNGSITSVVSVATETAP-IFIGKPESIIMEQALAKLGVHKDEAIMVGDNYETDIMAGINYGMDTLIVHTGFTSKEAL----LTKEIQPTYAVTKLTDWEFN
3QGM Chain:A ((7-261))
--DKKGYIIDIDGVIGKSVTPIPEGVEGVKKLKELGKKIIFVSNNSTRSRRILLERLRSFGLEVGEDEILVATYATARFIAREKPNAKVFTTGEEGLIEELRLAGLEIVDYDEAEYLVVGSNRKINFELMTKALRACLRGIRYIATNPDRIFPAEDGPIPGTGMIIGALYWMTGREPDVVVGKPSEVIMREALDILGLDAKDVAVVGDQIDVDVAAGKAIGAETVLVLTGVTTRENLDQMIERHGLKPDYVFNSLKD----
General information:
TITO was launched using:
RESULT:
Template:
3QGM.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -146232 for 2182 contacts (-67.0/contact) +
2D Compatibility (PS) -26865 + (NN) -12407 + (LL) 552
1D Compatibility (HY) -17600 + (ID) 4250
Total energy: -206802.0 ( -94.78 by residue)
QMean score : 0.563
(partial model without unconserved sides chains):
PDB file :
Tito_3QGM.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-3QGM-query.scw
PDB file :
Tito_Scwrl_3QGM.pdb
: