Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MTSRKLDQLYRQVIMDHYKNPRNNGELPDSDVTIDLNNPTCGDQIHLHLKMDGDKIVAAKFTGSGCSISMASASMMTQSIIGKTEKEALKMSREFSEM-VQGHDHETIDEYGDVEALAGVAKFPARIKCATLSWKAMERAIFEKEGTK
2QQ4 Chain:I ((5-137))
------DELYREILLDHYQSPRNFGVLPQATKQAGGMNPSCGDQVEVMVLLEGDTIADIRFQGQGCAISTASASLMTEAVKGKKVAEALELSRKFQAMVVEGAPPDPT--LGDLLALQGVAKLPARVKCATLAWHALEEAL-------
General information:
TITO was launched using:
RESULT:
Template:
2QQ4.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -54886 for 1076 contacts (-51.0/contact) +
2D Compatibility (PS) -14179 + (NN) -7972 + (LL) 948
1D Compatibility (HY) -11200 + (ID) 3250
Total energy: -90539.0 ( -84.14 by residue)
QMean score : 0.661
(partial model without unconserved sides chains):
PDB file :
Tito_2QQ4.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-2QQ4-query.scw
PDB file :
Tito_Scwrl_2QQ4.pdb
: