Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
--MRKVGIF-PSMIILFTVGISAVLYPLLPSEVAVHFGTDFSPDMFMQKWLGLIL---IPFL---------MIMFTGTEYYG---KEKVNQESLLEFEYC----FRLLLVLLTII-----QMSIIVYALGYDIPTGRFSLVTAGAF--------MFVVAAYIQYSKKLFK--FLTMIG----------------------------FKKIDAWSRNLLRKI--TTVTLNIAGTICFILALFMRNDPSYLMLAMLMTMCVI--VVGSGVYLNKK--
4LXU Chain:A ((1-273))
GHMIKICIAGKNNIAVNSLQFILKNYFEADQIVVIPNKNDKGIDSWQKSLLKFALDNNIKIVTLDEIYNIEQIIFFSLEFDQIIKIENFKSDRLFNIHFSALPKYKGVFTSITPILNNELESGVTLHRIDNGIDTGN--IIDQHCFPIDINDTARDLYFNYLKYGESIFKKNIQTIINNSYKDLKQTNINSSYFSRKDINLVHKINFKKTSFEIHNQIRAFIFQEYQLPIINNSKIIKSILANEFIGYNVFEEFENYFIISGIDGFKIIAQKLNK
General information:
TITO was launched using:
RESULT:
Template:
4LXU.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -187307 for 1416 contacts (-132.3/contact) +
2D Compatibility (PS) -21076 + (NN) -2190 + (LL) 104
1D Compatibility (HY) -12400 + (ID) 2000
Total energy: -224869.0 ( -158.81 by residue)
QMean score : 0.116
(partial model without unconserved sides chains):
PDB file :
Tito_4LXU.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-4LXU-query.scw
PDB file :
Tito_Scwrl_4LXU.pdb
: