Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MSEKQVALYIAVSLDGYIADENGSVEWLESIDSEGDAGYEAFFDNV----------DTVVMGRTTYQQI----------FSLTDTFPYSKKD--VYVFSNTKAGTKDEYADFVAGTVDTWLNNIDGEKIWLVGGAKLVQQFLKERAIDRFVITIAPIILGKGIPLFEEDQEHALELEEVTRFGQFAQLTYKNLEEN
1QZF Chain:A ((3-134))
--EKNVSIVVAASVLSSGIGINGQLPWSISEDLK-------FFSKITNNKCDSNKKNALIMGRKTWDSIGRRPLKNRIIVVISSSLPQDEADPNVVVFRN------------LEDSIENLMNDDSIENIFVCGGESIYRDALKDNFVDRIYLT-------------------------------------------
General information:
TITO was launched using:
RESULT:
Template:
1QZF.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -66142 for 738 contacts (-89.6/contact) +
2D Compatibility (PS) -11808 + (NN) -1821 + (LL) 4288
1D Compatibility (HY) -11600 + (ID) 1650
Total energy: -88733.0 ( -120.23 by residue)
QMean score : 0.410
(partial model without unconserved sides chains):
PDB file :
Tito_1QZF.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-1QZF-query.scw
PDB file :
Tito_Scwrl_1QZF.pdb
: