Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MARKTNTRKRRVKKNIESGIAHIRSTFNNTIVMITDTHGNALAWSSAGSLGFKGSRKSTPFAAQMAAESAAKSAQEHGLKTLEVTVKGPGSGREAAIRALQAAGLEVTAIKDVTPVPHNGCRPPKRRRV
4YHH Chain:K ((1-114))
------------KRQVASGRAYIHASYNNTIVTITDPDGNPITWSSGGVIGYKGSRKGTPYAAQLAALDAAKKAMAYGMQSVDVIVRGTGAGREQAIRALQASGLQVKSIVDDTPVPHNGCRPKKK---
General information:
TITO was launched using:
RESULT:
Template:
4YHH.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -30879 for 877 contacts (-35.2/contact) +
2D Compatibility (PS) -13242 + (NN) -13022 + (LL) 1488
1D Compatibility (HY) -8000 + (ID) 3350
Total energy: -67005.0 ( -76.40 by residue)
QMean score : 0.646
(partial model without unconserved sides chains):
PDB file :
Tito_4YHH.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-4YHH-query.scw
PDB file :
Tito_Scwrl_4YHH.pdb
: