Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MPEQIDGNKLDLEERVVTINRVAKVVKGGRRFRFTALVVVGDKNGHVGFGTGKAQEVPDAIRKAVEDAKKNMVLVPTVDTTIPHTVVGHFGGGEILLKPASAGSGVTAGGPVRAVLELAGVADVSSKSLGSNTPINMVRATIDGIKQLKNAEDVAKLRGKTVEELLG
1HNW Chain:E ((5-152))
----------DFEEKMILIRRTARMQAGGRRFRFGALVVVGDRQGRVGLGFGKAPEVPLAVQKAGYYARRNMVEVPLQNGTIPHEIEVEFGASKIVLKPAAPGTGVIAGAVPRAILELAGVTDILTKELGSRNPINIAYATMEALRQLRTKADVERLR---------
General information:
TITO was launched using:
RESULT:
Template:
1HNW.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -68106 for 1158 contacts (-58.8/contact) +
2D Compatibility (PS) -15971 + (NN) -4751 + (LL) 932
1D Compatibility (HY) -12000 + (ID) 3950
Total energy: -103846.0 ( -89.68 by residue)
QMean score : 0.462
(partial model without unconserved sides chains):
PDB file :
Tito_1HNW.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-1HNW-query.scw
PDB file :
Tito_Scwrl_1HNW.pdb
: