Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MKANDIRDLSTTEIQDQEKALKEELFNLR-FQLATGQLENTARIREVRKAIARMKTIVRERELA
1KD1 Chain:W ((3-59))
LHVQEIRDMTPAEREAELDDLKTELLNARAVQAAGGAPENPGRIKELRKAIARIKTI-------
General information:
TITO was launched using:
RESULT:
Template:
1KD1.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) 838 for 305 contacts (2.7/contact) +
2D Compatibility (PS) -6218 + (NN) -3032 + (LL) 920
1D Compatibility (HY) -3200 + (ID) 1350
Total energy: -12042.0 ( -39.48 by residue)
QMean score : 0.664
(partial model without unconserved sides chains):
PDB file :
Tito_1KD1.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-1KD1-query.scw
PDB file :
Tito_Scwrl_1KD1.pdb
: