Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MTKGILGRKVGMTQVFTENGELIPVTVIEAAQNVVLQKKTVETDGYEAVQIGFEDKRAILSNKPEQGHVAKANTTPKRFIREFRDVNLDEYEIGAEVKVDVFAEGDIIDATGVSKGKGFQGVIKRHGQSRGPMAHGS-RYHRRPGSMGPV-APNRVFKNKLLPGRMGGEQITIQNLEIVKVDVEKNVLLVKGNVPGAKKALVQIKTATKAK
3CF5 Chain:B ((2-199))
--KGILGTKIGMTQIW-KNDRAIPVTVVLAGPCPIVQRKTAQTDGYEAVQIGYAPKAERKVNKPMQGHFAKAGVAPTRILREFRGFAPD----GDSVNVDIFAEGEKIDATGTSKGKGTQGVMKRWNFAGGPASHGSKKWHRRPGSIGQRKTPGRVYKGKRMAGHMGMERVTVQNLEVVEIRAGENLILVKGAIPGANGGLVVLR------
General information:
TITO was launched using:
RESULT:
Template:
3CF5.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -13923 for 1340 contacts (-10.4/contact) +
2D Compatibility (PS) -20818 + (NN) -3671 + (LL) 1336
1D Compatibility (HY) -14000 + (ID) 5350
Total energy: -56426.0 ( -42.11 by residue)
QMean score : 0.285
(partial model without unconserved sides chains):
PDB file :
Tito_3CF5.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-3CF5-query.scw
PDB file :
Tito_Scwrl_3CF5.pdb
: