Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
| Query sequence | MSIPSFLKLVEIQTKIASVFPFMLGTLFVVYQYDMFKPINTLIIFGSMLIFDLTTTAINNYMDYRK----ATDNHDYDYRTTSNVIGQEQIPV----RTVIITIFLMFFIATGLGVWLVFRTD---------LLVLLIGFVCFCI-GILYTFGPVPLSRMP-LGEIFSGVTMGFGIFFLAVYVNAYDAGIANLLWQGEMVTIQFNLIEIIRIGVVSLPCIFTIANIMLANNLCDLDEDIRNHRYTLPYYIGRKMGVLLFNTLYYA----SFLAVVVSVAINF--LHPIMLLSLITIYPVYRNLVKFNK------EQVKSKTFVIGIRNFVLINATLTILMAVSVVLQQLT-------- |
| 2X65 Chain:A ((1-334)) | VMKALILA----GGSGERFWPLS----------TPETPKQFLKLFGNKSLMRWTFERVLEEMDPKDVIVVTHKDYVERTKKELPELPDENIIAEPMKKNTAPACFIGTKLADDDEPVLVLPADHRIPDTKKFWKTVKKALDALEKYDGLFTFGIVPTRPETGYGYIEIGEELEEGVHKVAQFREKPDLETAKKFVESG--RFLWNS------GMFLWKAREFIEEVKVCE--PSIYENLKDVDPRNFEELKKAYEKVPSISVDYAVMEKSKKVRVVKADFEWSDLGNWSSVREIEGYTEESDEVILVDSDRVFVKTHNKPIAVVGLSDVIVIDTPNGILICKEEYAQKVREVVKKLFR |
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General information:
TITO was launched using:
| RESULT:
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Template: 2X65.pdb
Alignment : align.pir
Tito was launched with SMD and SCWRL
Tito text output
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3D Compatibility (PKB) -308467 for 2239 contacts (-137.8/contact) +
2D Compatibility (PS) -30940 + (NN) -1121 + (LL) 3244
1D Compatibility (HY) -1200 + (ID) 2400
Total energy: -340884.0 ( -152.25 by residue)
QMean score : 0.155
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