Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MKLTIGCDHGGRRLKDAIVKHLREKDIEVVDIGTYTDE-SVDFPSYAEEVANQVVSGQSELGILCCGTGIGMSIAANKVDGIRAAVVSDTFSARATREHNNSNILCLGERVIGEGLALLLVDTWLEASFAGDRHKRRLDKITELERK
4EM8 Chain:A ((4-143))
-RVFLSSDHAGVELRLFLSAYLRDLGCEVFDCGCDPKEHSVDYPDYVHDVVREV--SDTSFGVLICGTGIGMSIAANRHKNIRAALCSSTMLAKLSREHNDANVLCFGSRYIDPDTAQSVLYTFMTTAFLGGRHAVRVQKLGE----
General information:
TITO was launched using:
RESULT:
Template:
4EM8.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -105818 for 1147 contacts (-92.3/contact) +
2D Compatibility (PS) -15387 + (NN) -9304 + (LL) 816
1D Compatibility (HY) -12800 + (ID) 2900
Total energy: -145393.0 ( -126.76 by residue)
QMean score : 0.625
(partial model without unconserved sides chains):
PDB file :
Tito_4EM8.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-4EM8-query.scw
PDB file :
Tito_Scwrl_4EM8.pdb
: